Note: SaProt requires structural (SA token) input for optimal performance. AA sequence only mode works but must be finetuned frozen embeddings work only for SA, not AA sequences! With structural input, SaProt surpasses ESM2 in most tasks. We provide two ways to use SaProt, including through huggingface class and through the same way as in esm github. Users can choose either one to use. Huggingface model The following code shows how to load the model. esm model The esm version is also stored in the same folder, named SaProt 35M AF2.pt . We provide a function to load the model.
We use cookies for essential functionality and analytics. You can accept or reject analytics cookies.Cookie policy