BacteriaTIS DNABERT K6 89M This model, BacteriaTIS DNABERT K6 89M , is a DNA sequence classifier based on DNABERT trained for Translation Initiation Site (TIS) classification in bacterial genomes. It operates on 6 mer tokenized sequences derived from a 60 bp window (30 bp upstream + 30 bp downstream) around the TIS. The model was fine tuned using 89M trainable parameters . Model Details Base Model: DNABERT Task: Translation Initiation Site (TIS) Classification K mer Size: 6 Input Sequence Window: 60 bp (30 upstream + 30 downstream) of TIS site in ORF sequence Number of Trainable Parameters: 89M Max Sequence Length: 512 Precision Used: AMP (Automatic Mixed Precision) Install Dependencies Ensure you have transformers and torch installed: Load Model & Tokenizer Inference Example To classify a TIS, extract a 60 bp sequence window (30 bp upstream + 30 bp downstream) of the TIS codon site and convert it to 6 mers: Run Model
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