GENERator v2 eukaryote 1.2b base model Important Notice If you are using GENERator for sequence generation, please ensure that the length of each input sequence is a multiple of 6 . This can be achieved by either: 1. Padding the sequence on the left with 'A' ( left padding ); 2. Truncating the sequence from the left ( left truncation ). This requirement arises because GENERator employs a 6 mer tokenizer. If the input sequence length is not a multiple of 6 , the tokenizer will append an ' ' (out of vocabulary) token to the end of the token sequence. This can result in uninformative subsequent generations, such as repeated 'AAAAAA' . We apologize for any inconvenience this may cause and recommend adhering to the above guidelines to ensure accurate and meaningful generation results. Abouts In this repository, we present GENERator v2, a generative genomic foundation with enhanced performance in eukaryotic domain. More technical details are provided in the GENERator v2 technical report. Python scripts for downstream analysis are available on Github: https://github.com/GenerTeam/GENERator. How to use Example 1: Sequence Generation Example 2: Embedding Extraction Example 3: Sequence Scori…
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