STimage 1K4M Dataset Welcome to the STimage 1K4M Dataset repository. This dataset is designed to foster research in the field of spatial transcriptomics, combining high resolution histopathology images with detailed gene expression data. Update Feb 12, 2025 We corrected a typo in meta file (changed "Human Brain+Kidney 10X 02212023 Visium" to "Mouse Brain+Kidney 10X 02212023 Visium"). Please refer to meta all gene02122025.csv for the newest meta data. Dataset Description STimage 1K4M consists of 1,149 spatial transcriptomics slides, totaling over 4 million spots with paired gene expression data. This dataset includes: Images. Gene expression profiles matched with high resolution histopathology images. Spatial coordinates for each spot. Data structure The data structure is organized as follows: Repository structure The code for data processing and reproducing evaluation result in the paper are in Document. Acknowledgement The fine tuning and evaluation codes borrows heavily from CLIP and PLIP. Citation License All code is licensed under the MIT License see the LICENSE.md file for details.
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